71 citations · 183 across the 7 of their papers we have counts for
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q-bio.BM2018★ 13 cited
Frictional Effects on RNA Folding: Speed Limit and Kramers Turnover
Naoto Hori, Natalia A. Denesyuk, D. Thirumalai
We investigated frictional effects on the folding rates of a human telomerase hairpin (hTR HP) and H-type pseudoknot from the Beet Western Yellow Virus (BWYV PK) using simulations…
q-bio.BM2018★ 71 cited
Sequence-dependent Three Interaction Site (TIS) Model for Single and Double-stranded DNA
Debayan Chakraborty, Naoto Hori, Dave Thirumalai
We develop a robust coarse-grained model for single and double stranded DNA by representing each nucleotide by three interaction sites (TIS) located at the centers of mass of sugar…