25 citations · 36 across the 3 of their papers we have counts for
4 papers
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data
Ping-Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc +6
Paired single-cell sequencing technologies enable the simultaneous measurement of complementary modalities of molecular data at single-cell resolution. Along with the advances in t…
Feature-Based Classification of Networks
Ian Barnett, Nishant Malik, Marieke L. Kuijjer +2
Network representations of systems from various scientific and societal domains are neither completely random nor fully regular, but instead appear to contain recurring structural…
PyPanda: a Python Package for Gene Regulatory Network Reconstruction
David G. P. van IJzendoorn, Kimberly Glass, John Quackenbush +1
PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics da…
Estimating sample-specific regulatory networks
Marieke Lydia Kuijjer, Matthew Tung, GuoCheng Yuan +2
Biological systems are driven by intricate interactions among the complex array of molecules that comprise the cell. Many methods have been developed to reconstruct network models…