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q-bio.QM2017★ 1 cited
Network-based Distance Metric with Application to Discover Disease Subtypes in Cancer
Jipeng Qiang, Wei Ding, John Quackenbush +1
While we once thought of cancer as single monolithic diseases affecting a specific organ site, we now understand that there are many subtypes of cancer defined by unique patterns o…
q-bio.QM2016
PyPanda: a Python Package for Gene Regulatory Network Reconstruction
David G. P. van IJzendoorn, Kimberly Glass, John Quackenbush +1
PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics da…