25 citations · 38 across the 6 of their papers we have counts for
7 papers
Gene targeting in disease networks
Deborah Weighill, Marouen Ben Guebila, Kimberly Glass +3
Profiling of whole transcriptomes has become a cornerstone of molecular biology and an invaluable tool for the characterization of clinical phenotypes and the identification of dis…
Network Medicine in the age of biomedical big data
Abhijeet R. Sonawane, Scott T. Weiss, Kimberly Glass +1
Network medicine is an emerging area of research dealing with molecular and genetic interactions, network biomarkers of disease, and therapeutic target discovery. Large-scale biome…
PyPanda: a Python Package for Gene Regulatory Network Reconstruction
David G. P. van IJzendoorn, Kimberly Glass, John Quackenbush +1
PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics da…
High Performance Computing of Gene Regulatory Networks using a Message-Passing Model
Kimberly Glass, John Quackenbush, Jeremy Kepner
Gene regulatory network reconstruction is a fundamental problem in computational biology. We recently developed an algorithm, called PANDA (Passing Attributes Between Networks for…
Estimating sample-specific regulatory networks
Marieke Lydia Kuijjer, Matthew Tung, GuoCheng Yuan +2
Biological systems are driven by intricate interactions among the complex array of molecules that comprise the cell. Many methods have been developed to reconstruct network models…
Finding New Order in Biological Functions from the Network Structure of Gene Annotations
Kimberly Glass, Michelle Girvan
The Gene Ontology (GO) provides biologists with a controlled terminology that describes how genes are associated with functions and how functional terms are related to each other.…
Annotation Enrichment Analysis: An Alternative Method for Evaluating the Functional Properties of Gene Sets
Kimberly Glass, Michelle Girvan
Gene annotation databases (compendiums maintained by the scientific community that describe the biological functions performed by individual genes) are commonly used to evaluate th…