3 papers
cs.LG2018
DeepPINK: reproducible feature selection in deep neural networks
Yang Young Lu, Yingying Fan, Jinchi Lv +1
Deep learning has become increasingly popular in both supervised and unsupervised machine learning thanks to its outstanding empirical performance. However, because of their intrin…
q-bio.QM2018
Alignment-Free Sequence Analysis and Applications
Jie Ren, Xin Bai, Yang Young Lu +4
Genome and metagenome comparisons based on large amounts of next-generation sequencing (NGS) data pose significant challenges for alignment-based approaches due to the huge data si…
q-bio.GN2016
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge
Yang Young Lu, Ting Chen, Jed A. Fuhrman +1
The advent of next-generation sequencing (NGS) technologies enables researchers to sequence complex microbial communities directly from environment. Since assembly typically produc…