690 citations · 709 across the 7 of their papers we have counts for
7 papers
Recovering Time-Varying Networks From Single-Cell Data
Euxhen Hasanaj, Barnabás Póczos, Ziv Bar-Joseph
Gene regulation is a dynamic process that underlies all aspects of human development, disease response, and other key biological processes. The reconstruction of temporal gene regu…
Causal inference using deep neural networks
Ye Yuan, Xueying Ding, Ziv Bar-Joseph
Causal inference from observation data is a core problem in many scientific fields. Here we present a general supervised deep learning framework that infers causal interactions by…
Genome-Wide Epigenetic Modifications as a Shared Memory Consensus Problem
Sabrina Rashid, Gadi Taubenfeld, Ziv Bar-Joseph
A distributed computing system is a collection of processors that communicate either by reading and writing from a shared memory or by sending messages over some communication netw…
Mapping the Human Body at Cellular Resolution -- The NIH Common Fund Human BioMolecular Atlas Program
Michael P Snyder, Shin Lin, Amanda Posgai +22
Transformative technologies are enabling the construction of three dimensional (3D) maps of tissues with unprecedented spatial and molecular resolution. Over the next seven years,…
Distributed Gradient Descent in Bacterial Food Search
Shashank Singh, Sabrina Rashid, Zhicheng Long +4
Communication and coordination play a major role in the ability of bacterial cells to adapt to ever changing environments and conditions. Recent work has shown that such coordinati…
Beeping a Maximal Independent Set
Yehuda Afek, Noga Alon, Ziv Bar-Joseph +3
We consider the problem of computing a maximal independent set (MIS) in an extremely harsh broadcast model that relies only on carrier sensing. The model consists of an anonymous b…
MIS on the fly
Yehuda Afek, Noga Alon, Ziv Bar-Joseph
Humans are very good at optimizing solutions for specific problems. Biological processes, on the other hand, have evolved to handle multiple constrained distributed environments an…