activity
20162025
most citedEigenFold: Generative Protein Structure Prediction with Diffusion Models

39 citations · 40 across the 8 of their papers we have counts for

collaborators

8 papers

cs.LG2025

Continuously Tempered Diffusion Samplers

Ezra Erives, Bowen Jing, Peter Holderrieth +1

Annealing-based neural samplers seek to amortize sampling from unnormalized distributions by training neural networks to transport a family of densities interpolating from source t…

cs.LG2025

An Introduction to Flow Matching and Diffusion Models

Peter Holderrieth, Ezra Erives

Diffusion and flow-based models have become the state of the art for generative AI across a wide range of data modalities, including images, videos, shapes, molecules, music, and m…

cs.LG2024

Verlet Flows: Exact-Likelihood Integrators for Flow-Based Generative Models

Ezra Erives, Bowen Jing, Tommi Jaakkola

Approximations in computing model likelihoods with continuous normalizing flows (CNFs) hinder the use of these models for importance sampling of Boltzmann distributions, where exac…

q-bio.BM2023★ 39 cited

EigenFold: Generative Protein Structure Prediction with Diffusion Models

Bowen Jing, Ezra Erives, Peter Pao-Huang +3

Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational ensem…

math.CO2019

Asymptotics of -Dimensional Visibility

Ezra Erives, Srinivasan Sathiamurthy, Zarathustra Brady

We consider the space , imagined as a three dimensional, axis-aligned grid world partitioned into unit cubes. Each cube is either considered to…

math.CO2017★ 1 cited

On Variations of Nim and Chomp

June Ahn, Benjamin Chen, Richard Chen +8

We study two variations of Nim and Chomp which we call Monotonic Nim and Diet Chomp. In Monotonic Nim the moves are the same as in Nim, but the positions are non-decreasing numbers…

math.CO2016

Alternator Coins

Benjamin Chen, Ezra Erives, Leon Fan +9

We introduce a new type of coin: \textit{the alternator}. The alternator can pretend to be either a real or a fake coin (which is lighter than a real one). Each time it is put on a…

math.HO2016

Who Is Guilty?

Benjamin Chen, Ezra Erives, Leon Fan +9

We discuss a generalization of logic puzzles in which truth-tellers and liars are allowed to deviate from their pattern in case of one particular question: "Are you guilty?"