5 citations · 6 across the 7 of their papers we have counts for
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cs.DS2024
On the number of -mers admitting a given lexicographical minimizer
Florian Ingels, Camille Marchet, Mikaël Salson
The minimizer of a word of size (a -mer) is defined as its smallest substring of size (with ), according to some ordering on -mers. minimizers have been used…
q-bio.GN2024
Advances in practical k-mer sets: essentials for the curious
Camille Marchet
This paper provides a comprehensive survey of data structures for representing k-mer sets, which are fundamental in high-throughput sequencing analysis. It categorizes the methods…
q-bio.GN2024★ 1 cited
Advances in colored k-mer sets: essentials for the curious
Camille Marchet
This paper provides a comprehensive review of recent advancements in k-mer-based data structures representing collections of several samples (sometimes called colored de Bruijn gra…