3 papers
q-bio.GN2025
CFM-GP: Unified Conditional Flow Matching to Learn Gene Perturbation Across Cell Types
Abrar Rahman Abir, Sajib Acharjee Dip, Liqing Zhang
Understanding gene perturbation effects across diverse cellular contexts is a central challenge in functional genomics, with important implications for therapeutic discovery and pr…
cs.LG2025
MoXGATE: Modality-aware cross-attention for multi-omic gastrointestinal cancer sub-type classification
Sajib Acharjee Dip, Uddip Acharjee Shuvo, Dipanwita Mallick +2
Cancer subtype classification is crucial for personalized treatment and prognostic assessment. However, effectively integrating multi-omic data remains challenging due to the heter…
cs.LG2025
AbFlowNet: Optimizing Antibody-Antigen Binding Energy via Diffusion-GFlowNet Fusion
Abrar Rahman Abir, Haz Sameen Shahgir, Md Rownok Zahan Ratul +3
Complementarity Determining Regions (CDRs) are critical segments of an antibody that facilitate binding to specific antigens. Current computational methods for CDR design utilize r…