60 citations · 175 across the 14 of their papers we have counts for
4 papers · 1 filter
Prototype Matching Networks for Large-Scale Multi-label Genomic Sequence Classification
Jack Lanchantin, Arshdeep Sekhon, Ritambhara Singh +1
One of the fundamental tasks in understanding genomics is the problem of predicting Transcription Factor Binding Sites (TFBSs). With more than hundreds of Transcription Factors (TF…
Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin
Ritambhara Singh, Jack Lanchantin, Arshdeep Sekhon +1
The past decade has seen a revolution in genomic technologies that enable a flood of genome-wide profiling of chromatin marks. Recent literature tried to understand gene regulation…
GaKCo: a Fast GApped k-mer string Kernel using COunting
Ritambhara Singh, Arshdeep Sekhon, Kamran Kowsari +3
String Kernel (SK) techniques, especially those using gapped -mers as features (gk), have obtained great success in classifying sequences like DNA, protein, and text. However, t…
Memory Matching Networks for Genomic Sequence Classification
Jack Lanchantin, Ritambhara Singh, Yanjun Qi
When analyzing the genome, researchers have discovered that proteins bind to DNA based on certain patterns of the DNA sequence known as "motifs". However, it is difficult to manual…