93 citations · 117 across the 11 of their papers we have counts for
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gpuGEM: GPU-based linear optimisation of genome-scale metabolic models
Farid Zare†, Timothy Hulshof†, Ines Thiele +1
Summary: Genome-scale metabolic models increasingly challenge CPU linear-programming solvers in repeated-optimisation workflows. We present gpuGEM, an open-source Python library fo…
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0
Laurent Heirendt, Sylvain Arreckx, Thomas Pfau +52
COnstraint-Based Reconstruction and Analysis (COBRA) provides a molecular mechanistic framework for integrative analysis of experimental data and quantitative prediction of physico…
DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia
Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele
Motivation: Flux balance analysis, and its variants, are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The exploration of high di…