6 citations · 6 across the 2 of their papers we have counts for
4 papers · 1 filter
Fast computation of approximate weak common intervals in multiple indeterminate strings
Daniel Doerr, Bernard M. E. Moret
In ongoing work to define a principled method for syntenic block discovery and structuring, work based on homology-derived constraints and a generalization of common intervals, we…
Small Parsimony for Natural Genomes in the DCJ-Indel Model
Daniel Doerr, Cedric Chauve
Reconstructing ancestral gene orders is an important step towards understanding genome evolution. The Small Parsimony Problem (SPP) has been extensively studied in this regard. The…
Computing the rearrangement distance of natural genomes
Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr +1
The computation of genomic distances has been a very active field of computational comparative genomics over the last 25 years. Substantial results include the polynomial-time comp…
The gene family-free median of three
Daniel Doerr, Pedro Feijao, Metin Balaban +1
The gene family-free framework for comparative genomics aims at developing methods for gene order analysis that do not require prior gene family assignment, but work directly on a…