1.3k citations · 1.5k across the 41 of their papers we have counts for
4 papers · 1 filter
The Stan Math Library: Reverse-Mode Automatic Differentiation in C++
Bob Carpenter, Matthew D. Hoffman, Marcus Brubaker +3
As computational challenges in optimization and statistical inference grow ever harder, algorithms that utilize derivatives are becoming increasingly more important. The implementa…
Building Proteins in a Day: Efficient 3D Molecular Reconstruction
Marcus A. Brubaker, Ali Punjani, David J. Fleet
Discovering the 3D atomic structure of molecules such as proteins and viruses is a fundamental research problem in biology and medicine. Electron Cryomicroscopy (Cryo-EM) is a prom…
Microscopic Advances with Large-Scale Learning: Stochastic Optimization for Cryo-EM
Ali Punjani, Marcus A. Brubaker
Determining the 3D structures of biological molecules is a key problem for both biology and medicine. Electron Cryomicroscopy (Cryo-EM) is a promising technique for structure estim…
Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images
Jianhua Zhao, Marcus A. Brubaker, Samir Benlekbir +1
Single particle electron cryomicroscopy (cryo-EM) allows for structures of proteins and protein complexes to be determined from images of non-crystalline specimens. Cryo-EM data an…