457 citations · 480 across the 7 of their papers we have counts for
7 papers
ProLanGO: Protein Function Prediction Using Neural~Machine Translation Based on a Recurrent Neural Network
Renzhi Cao, Colton Freitas, Leong Chan +3
With the development of next generation sequencing techniques, it is fast and cheap to determine protein sequences but relatively slow and expensive to extract useful information f…
DeepQA: Improving the estimation of single protein model quality with deep belief networks
Renzhi Cao, Debswapna Bhattacharya, Jie Hou +1
Protein quality assessment (QA) by ranking and selecting protein models has long been viewed as one of the major challenges for protein tertiary structure prediction. Especially, e…
Protein single-model quality assessment by feature-based probability density functions
Renzhi Cao, Jianlin Cheng
Protein quality assessment (QA) has played an important role in protein structure prediction. We developed a novel single-model quality assessment method - Qprob. Qprob calculates…
SMISS: A protein function prediction server by integrating multiple sources
Renzhi Cao, Zhaolong Zhong, Jianlin Cheng
SMISS is a novel web server for protein function prediction. Three different predictors can be selected for different usage. It integrates different sources to improve the protein…
Evaluation of Protein Structural Models Using Random Forests
Renzhi Cao, Taeho Jo, Jianlin Cheng
Protein structure prediction has been a grand challenge problem in the structure biology over the last few decades. Protein quality assessment plays a very important role in protei…
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Yuxiang Jiang, Tal Ronnen Oron, Wyatt T Clark +144
Background: The increasing volume and variety of genotypic and phenotypic data is a major defining characteristic of modern biomedical sciences. At the same time, the limitations i…
GMOL: An Interactive Tool for 3D Genome Structure Visualization
Jackson Nowotny, Avery Wells, Lingfei Xu +4
It has been shown that genome spatial structures largely affect both genome activity and DNA function. Knowing this, many researchers are currently attempting to accurately model g…