358 citations · 1k across the 33 of their papers we have counts for
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Nonequilibrium thermodynamics of DNA nanopore unzipping
Antonio Suma, Vincenzo Carnevale, Cristian Micheletti
Using theory and simulations, we carried out a first systematic characterization of DNA unzipping via nanopore translocation. Starting from partially unzipped states, we found thre…
Dynamics of Motility-Induced clusters: coarsening beyond Ostwald ripening
Claudio B. Caporusso, Leticia F. Cugliandolo, Pasquale Digregorio +3
We study the dynamics of clusters of Active Brownian Disks generated by Motility-Induced Phase Separation, by applying an algorithm that we devised to track cluster trajectories. W…
3D polymer simulations of genome organization and transcription across different chromosomes and cell types
Massimiliano Semeraro, Giuseppe Negro, Antonio Suma +2
We employ the diffusing transcription factors model for numerical simulation of chromatin topology conformations and transcriptional processes of human chromatin. Simulations of a…
Hydrodynamic effects on the liquid-hexatic transition of active colloids
Giuseppe Negro, Claudio Basilio Caporusso, Pasquale Digregorio +3
We study numerically the role of hydrodynamics in the liquid-hexatic transition of active colloids at intermediate activity, where motility induced phase separation (MIPS) does not…