421 citations · 1.2k across the 38 of their papers we have counts for
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Open-Source Protein Language Models for Function Prediction and Protein Design
Shivasankaran Vanaja Pandi, Bharath Ramsundar
Protein language models (PLMs) have shown promise in improving the understanding of protein sequences, contributing to advances in areas such as function prediction and protein eng…
Open-source Polymer Generative Pipeline
Debasish Mohanty, V Shreyas, Akshaya Palai +1
Polymers play a crucial role in the development of engineering materials, with applications ranging from mechanical to biomedical fields. However, the limited polymerization proces…
Open source Differentiable ODE Solving Infrastructure
Rakshit Kr. Singh, Aaron Rock Menezes, Rida Irfan +1
Ordinary Differential Equations (ODEs) are widely used in physics, chemistry, and biology to model dynamic systems, including reaction kinetics, population dynamics, and biological…
A Modular Open Source Framework for Genomic Variant Calling
Ankita Vaishnobi Bisoi, Shreyas V, Jose Siguenza +1
Variant calling is a fundamental task in genomic research, essential for detecting genetic variations such as single nucleotide polymorphisms (SNPs) and insertions or deletions (in…
Open Source Infrastructure for Automatic Cell Segmentation
Aaron Rock Menezes, Bharath Ramsundar
Automated cell segmentation is crucial for various biological and medical applications, facilitating tasks like cell counting, morphology analysis, and drug discovery. However, man…
Open-Source Molecular Processing Pipeline for Generating Molecules
V Shreyas, Jose Siguenza, Karan Bania +1
Generative models for molecules have shown considerable promise for use in computational chemistry, but remain difficult to use for non-experts. For this reason, we introduce open-…