34 citations · 51 across the 4 of their papers we have counts for
4 papers
Prediction and verification of indirect interactions in densely interconnected regulatory networks
Koon-Kiu Yan, Sergei Maslov, Ilya Mazo +1
We develop a matrix-based approach to predict and verify indirect interactions in gene and protein regulatory networks. It is based on the approximate transitivity of indirect regu…
Finding mesoscopic communities in sparse networks
I. Ispolatov, I. Mazo, A. Yuryev
We suggest a fast method to find possibly overlapping network communities of a desired size and link density. Our method is a natural generalization of the finite- superparamegn…
Cliques and duplication-divergence network growth
I. Ispolatov, P. L. Krapivsky, I. Mazo +1
A population of complete subgraphs or cliques in a network evolving via duplication-divergence is considered. We find that a number of cliques of each size scales linearly with the…
Binding properties and evolution of homodimers in protein-protein interaction networks
Iaroslav Ispolatov, Anton Yuryev, Ilya Mazo +1
We demonstrate that Protein-Protein Interaction (PPI) networks in several eucaryotic organisms contain significantly more self-interacting proteins than expected if such homodimers…