5 citations · 5 across the 4 of their papers we have counts for
5 papers
libRoadRunner 2.0: A High-Performance SBML Simulation and Analysis Library
Ciaran Welsh, Jin Xu, Lucian Smith +3
Motivation: This paper presents libRoadRunner 2.0, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models expressed…
Real-Time Interactive Modeling and Simulation in Biological Physics and Active Matter with Mechanica
Endre T. Somogyi, Jeffery Coulter, Fanbo Sun +2
Modeling and simulation (M&S) has revolutionized the way modern engineered products are designed, tested and evaluated. Yet modeling and simulation is much less frequently applied…
A modeling and simulation language for biological cells with coupled mechanical and chemical processes
Endre Somogyi, James A. Glazier
Biological cells are the prototypical example of active matter. Cells sense and respond to mechanical, chemical and electrical environmental stimuli with a range of behaviors, incl…
libRoadRunner: A High Performance SBML Simulation and Analysis Library
Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier +4
This paper presents libRoadRunner, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models \ expressed using Systems…
ProtoMD: A Prototyping Toolkit for Multiscale Molecular Dynamics
Endre Somogyi, Andrew Abi Mansour, Peter J. Ortoleva
ProtoMD is a toolkit that facilitates the development of algorithms for multiscale molecular dynamics (MD) simulations. It is designed for multiscale methods which capture the dyna…