426 citations · 426 across the 2 of their papers we have counts for
5 papers
CABS-flex standalone 3: an open command-line platform for protein flexibility simulation, peptide structure modeling, and protein-peptide docking
Chandran Nithin, Karol Wroblewski, Piotr Szukalo +5
Summary: CABS-flex standalone 3 is an open command-line platform for fast CABS-based coarse-grained modeling of protein flexibility, peptide structures, and global or information-g…
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures
Aleksander Kuriata, Aleksandra Maria Gierut, Tymoteusz Oleniecki +4
Classical simulations of protein flexibility remain computationally expensive, especially for large proteins. A few years ago, we developed a fast method for predicting protein str…
Flexible protein-peptide docking using CABS-dock with knowledge about the binding site
Mateusz Kurcinski, Maciej Pawel Ciemny, Maciej Blaszczyk +2
Despite considerable efforts, structural prediction of protein-peptide complexes is still a very challenging task, mainly due to two reasons: high flexibility of the peptides and t…
Towards protein-protein docking with significant structural changes using CABS-dock
Maciej Pawel Ciemny, Mateusz Kurcinski, Andrzej Kolinski +1
The protein-protein interactions (PPIs) are crucial for understanding the majority of cellular processes. PPIs play important role in gene transcription regulation, cellular signal…
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
Mateusz Kurcinski, Michal Jamroz, Maciej Blaszczyk +2
Protein-peptide interactions play a key role in cell functions. Their structural characterization, though challenging, is important for the discovery of new drugs. The CABS-dock we…