22 citations · 46 across the 11 of their papers we have counts for
13 papers
Know When to Fold 'Em: Self-Assembly of Shapes by Folding in Oritatami
Erik D. Demaine, Jacob Hendricks, Meagan Olsen +5
An oritatami system (OS) is a theoretical model of self-assembly via co-transcriptional folding. It consists of a growing chain of beads which can form bonds with each other as the…
Thermodynamic Binding Networks
David Doty, Trent A. Rogers, David Soloveichik +2
Strand displacement and tile assembly systems are designed to follow prescribed kinetic rules (i.e., exhibit a specific time-evolution). However, the expected behavior in the limit…
Universal Simulation of Directed Systems in the abstract Tile Assembly Model Requires Undirectedness
Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers
As a mathematical model of self-assembling systems, Winfree's abstract Tile Assembly Model (aTAM) is a remarkable platform for studying the behaviors and powers of self-assembling…
Hierarchical Self-Assembly of Fractals with Signal-Passing Tiles
Jacob Hendricks, Meagan Olsen, Matthew J. Patitz +2
In this paper, we present high-level overviews of tile-based self-assembling systems capable of producing complex, infinite, aperiodic structures known as discrete self-similar fra…
The Simulation Powers and Limitations of Higher Temperature Hierarchical Self-Assembly Systems
Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers
In this paper, we extend existing results about simulation and intrinsic universality in a model of tile-based self-assembly. Namely, we work within the 2-Handed Assembly Model (2H…
Replication of arbitrary hole-free shapes via self-assembly with signal-passing tiles
Andrew Alseth, Jacob Hendricks, Matthew J. Patitz +1
In this paper, we investigate the abilities of systems of self-assembling tiles which can each pass a constant number of signals to their immediate neighbors to create replicas of…