63 citations · 91 across the 5 of their papers we have counts for
6 papers
Technical Report: Modelling Multiple Cell Types with Partial Differential Equations
Simon Tanaka
Partial differential equations are a convenient way to describe reaction- advection-diffusion processes of signalling models. If only one cell type is present, and tissue dynamics…
LBIBCell: A Cell-Based Simulation Environment for Morphogenetic Problems
Simon Tanaka, David Sichau, Dagmar Iber
The simulation of morphogenetic problems requires the simultaneous and coupled simulation of signalling and tissue dynamics. A cellular resolution of the tissue domain is important…
Inter-dependent Tissue Growth and Turing Patterning in a Model for Long Bone Development
Simon Tanaka, Dagmar Iber
The development of long bones requires a sophisticated spatial organization of cellular signaling, proliferation, and differentiation programs. How such spatial organization emerge…
Simulation of a Microfluidic Gradient Generator using Lattice Boltzmann Methods
Simon Tanaka, Dagmar Iber
Microfluidics provides a powerful and versatile technology to accurately control spatial and temporal conditions for cell culturing and can therefore be used to study cellular resp…
Simulating Tissue Morphogenesis and Signaling
Dagmar Iber, Simon Tanaka, Patrick Fried +2
During embryonic development tissue morphogenesis and signaling are tightly coupled. It is therefore important to simulate both tissue morphogenesis and signaling simultaneously in…
Simulating Organogenesis in COMSOL
Philipp Germann, Dzianis Menshykau, Simon Tanaka +1
Organogenesis is a tightly regulated process that has been studied experimentally for decades. Computational models can help to integrate available knowledge and to better understa…