751 citations · 890 across the 19 of their papers we have counts for
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q-bio.PE2021
Mutation frequency time series reveal complex mixtures of clones in the world-wide SARS-CoV-2 viral population
Hong-Li Zeng, Yue Liu, Vito Dichio +3
We compute the allele frequencies of the alpha (B.1.1.7), beta (B.1.351) and delta (B.167.2) variants of SARS-CoV-2 from almost two million genome sequences on the GISAID repositor…
q-bio.PE2020
Inferring genetic fitness from genomic data
Hong-Li Zeng, Erik Aurell
The genetic composition of a naturally developing population is considered as due to mutation, selection, genetic drift and recombination. Selection is modeled as single-locus term…
q-bio.PE2018
DCA for genome-wide epistasis analysis: the statistical genetics perspective
Chen-Yi Gao, Fabio Cecconi, Angelo Vulpiani +2
Direct Coupling Analysis (DCA) is a now widely used method to leverage statistical information from many similar biological systems to draw meaningful conclusions on each system se…