266 citations · 397 across the 8 of their papers we have counts for
8 papers
Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy
Giuseppe de Vito, Lapo Turrini, Caroline Müllenbroich +9
Light-sheet fluorescence microscopy (LSFM) enables real-time whole-brain functional imaging in zebrafish larvae. Conventional one photon LSFM can however induce undesirable visual…
Semantic Segmentation of Neuronal Bodies in Fluorescence Microscopy Using a 2D+3D CNN Training Strategy with Sparsely Annotated Data
Filippo Maria Castelli, Matteo Roffilli, Giacomo Mazzamuto +3
Semantic segmentation of neuronal structures in 3D high-resolution fluorescence microscopy imaging of the human brain cortex can take advantage of bidimensional CNNs, which yield g…
Reconstruction scheme for excitatory and inhibitory dynamics with quenched disorder: application to zebrafish imaging
Lorenzo Chicchi, Gloria Cecchini, Ihusan Adam +7
An inverse procedure is developed and tested to recover functional and structural information from global signals of brains activity. The method assumes a leaky-integrate and fire…
Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy
Giuseppe de Vito, Pietro Ricci, Lapo Turrini +6
Light-sheet microscopy (LSM) is a powerful imaging technique that uses a planar illumination oriented orthogonally to the detection axis. Two-photon (2P) LSM is a variant of LSM th…
Inferring network structure and local dynamics from neuronal patterns with quenched disorder
Ihusan Adam, Gloria Cecchini, Duccio Fanelli +8
An inverse procedure is proposed and tested which aims at recovering the a priori unknown functional and structural information from global signals of living brains activity. To th…
Finite-Difference Time-Domain simulations of transmission microscopy enable a better interpretation of 3D nerve fiber architectures in the brain
Miriam Menzel, Markus Axer, Hans De Raedt +5
In many laboratories, conventional bright-field transmission microscopes are available to study the structure and organization principles of fibrous tissue samples, but they usuall…
Cell identification in whole-brain multiview images of neural activation
Marco Paciscopi, Ludovico Silvestri, Francesco Saverio Pavone +1
We present a scalable method for brain cell identification in multiview confocal light sheet microscopy images. Our algorithmic pipeline includes a hierarchical registration approa…
A versatile clearing agent for multi-modal brain imaging
Irene Costantini, Jean-Pierre Ghobril, Antonino Paolo Di Giovanna +11
Extensive mapping of neuronal connections in the central nervous system requires high-throughput um-scale imaging of large volumes. In recent years, different approaches have been…