21 citations · 95 across the 8 of their papers we have counts for
7 papers · 1 filter
Polymer Translocation out of Planar Confinements
Debabrata Panja, Gerard T. Barkema, Robin C. Ball
Polymer translocation in three dimensions out of planar confinements is studied in this paper. Three membranes are located at , and . These membranes are impenet…
Pore-blockade Times for Field-Driven Polymer Translocation
Henk Vocks, Debabrata Panja, Gerard T. Barkema +1
We study pore blockade times for a translocating polymer of length , driven by a field across the pore in three dimensions. The polymer performs Rouse dynamics, i.e., we con…
Folding and form: Insights from lattice simulations
P. F. N. Faisca, M. M. Telo da Gama, R. C. Ball
Monte Carlo simulations of a Miyazawa-Jernigan lattice-polymer model indicate that, depending on the native's structure geometry, the model exhibits two broad classes of folding me…
Topological complexity, contact order and protein folding rates
P. F. N. Faisca, R. C. Ball
Monte Carlo simulations of protein folding show the emergence of a strong correlation between the relative contact order parameter, CO, and the folding time, t, of two-state foldin…
Thermodynamic control and dynamical regimes in protein folding
P. F. N. Faisca, R. C. Ball
Monte Carlo simulations of a simple lattice model of protein folding show two distinct regimes depending on the chain length. The first regime well describes the folding of small p…
Kinetic Capacity of a Protein
Robin C Ball, Thomas M A Fink
The ability of a protein to recognise multiple independent target conformations was demonstrated in [1]. Here we consider the recognition of correlated configurations, which we app…