2 papers
q-bio.PE2015
Twisted trees and inconsistency of tree estimation when gaps are treated as missing data -- the impact of model mis-specification in distance corrections
Emily Jane McTavish, Mike Steel, Mark T. Holder
Statistically consistent estimation of phylogenetic trees or gene trees is possible if pairwise sequence dissimilarities can be converted to a set of distances that are proportiona…
q-bio.PE2009
Estimating Trees from Filtered Data: Identifiability of Models for Morphological Phylogenetics
Elizabeth S. Allman, Mark T. Holder, John A. Rhodes
As an alternative to parsimony analyses, stochastic models have been proposed (Lewis, 2001), (Nylander, et al., 2004) for morphological characters, so that maximum likelihood or Ba…