5 citations · 6 across the 13 of their papers we have counts for
13 papers
Prediction of Flavin Mononucleotide (FMN) Binding Sites in Proteins Using the 3D Search Motif Method and Double-Centroid Reduced Representation of Protein 3D Structures
Arkanjan Banerjee, Vicente M. Reyes
A pharmacophore consists of the parts of the structure of the ligand that are sufficient to express the biological and pharmacological effects of the ligand. It is usually a substr…
Visualization of Protein 3D Structures in Reduced Representation with Simultaneous Display of Intra- and Inter-Molecular Interactions
Vrunda Sheth, Vicente M. Reyes
Protein structure representation is an important tool in structural biology. There exists different methods of representing the protein 3D structures and different biologists favor…
Size-Independent Quantification of Ligand Binding Site Depth in Receptor Proteins
Srujana Cheguri, Vicente M. Reyes
We have developed a web server that implements two complementary methods to quantify the depth of ligand binding site (LBS) in protein-ligand complexes: the "secant plane" (SP) and…
Representing Rod-Shaped Protein 3D Structures in Cylindrical Coordinates
Srujana Cheguri, Vicente M. Reyes
Based on overall 3D structure, proteins may be grouped into two broad categories, namely, globular proteins (spheroproteins), and elongated or rod-shaped proteins (RSP). The former…
A Cancer Biotherapy Resource
Preety Priya, Vicente M. Reyes
Cancer Biotherapy (CB), as opposed to cancer chemotherapy, is the use of macromolecular, biological agents instead of organic chemicals or drugs to treat cancer. Biological agents…
Spherical Distance Metrics Applied to Protein Structure Classification
James DeFelice, Vicente M. Reyes
Structural relationships among proteins are important in the study of their evolution as well as in drug design and development. The protein 3D structure has been shown to be effec…