2 papers
cs.LG2025
Self Distillation Fine-Tuning of Protein Language Models Improves Versatility in Protein Design
Amin Tavakoli, Raswanth Murugan, Ozan Gokdemir +3
Supervised fine-tuning (SFT) is a standard approach for adapting large language models to specialized domains, yet its application to protein sequence modeling and protein language…
cs.LG2025
OrbitAll: A Unified Quantum Mechanical Representation Deep Learning Framework for All Molecular Systems
Beom Seok Kang, Vignesh C. Bhethanabotla, Amin Tavakoli +6
We introduce OrbitAll, a geometry- and physics-informed deep learning framework that encodes any molecular system with arbitrary charges, spins, and environmental effects using ele…