2 papers
q-bio.BM2025
UNAAGI: Atom-Level Diffusion for Generating Non-Canonical Amino Acid Substitutions
Han Tang, Wouter Boomsma
Proposing beneficial amino acid substitutions, whether for mutational effect prediction or protein engineering, remains a central challenge in structural biology. Recent inverse fo…
q-bio.GN2025
Gene finding revisited: improved robustness through structured decoding from learned embeddings
Frederikke I. Marin, Dennis Pultz, Wouter Boomsma
Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw ge…