2 papers
cs.CL2025
PUMA: Discovery of Protein Units via Mutation-Aware Merging
Burak Suyunu, Ãzdeniz Dolu, Ibukunoluwa Abigail Olaosebikan +2
Proteins are the essential drivers of biological processes. At the molecular level, they are chains of amino acids that can be viewed through a linguistic lens where the twenty sta…
cs.CL2024
Linguistic Laws Meet Protein Sequences: A Comparative Analysis of Subword Tokenization Methods
Burak Suyunu, Enes Taylan, Arzucan Ãzgür
Tokenization is a crucial step in processing protein sequences for machine learning models, as proteins are complex sequences of amino acids that require meaningful segmentation to…