activity
20132023
most citedTackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS

1.2k citations · 3.1k across the 11 of their papers we have counts for

collaborators

11 papers

physics.flu-dyn2023

Near-wall depletion and layering affect contact line friction of multicomponent liquids

Michele Pellegrino, Berk Hess

The main causes of energy dissipation in micro- and nano-scale wetting are viscosity and liquid-solid friction localized in the three-phase contact line region. Theoretical models…

physics.flu-dyn2022★ 3 cited

Asymmetry of wetting and de-wetting on high-friction surfaces originates from the same molecular physics

Michele Pellegrino, Berk Hess

The motion of three-phase contact lines is one of the most relevant research topics of micro- and nano-fluidics. According to many hydrodynamic and molecular models, the dynamics o…

physics.flu-dyn2021★ 19 cited

Nanoscale sheared droplet: Volume-of-Fluid, phase-field and no-slip molecular dynamics

Uǧis Lācis, Michele Pellegrino, Johan Sundin +4

The motion of the three-phase contact line between two immiscible fluids and a solid surface arises in a variety of wetting phenomena and technological applications. One challenge…

physics.comp-ph2020★ 966 cited

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS

Szilárd Páll, Artem Zhmurov, Paul Bauer +5

The introduction of accelerator devices such as graphics processing units (GPUs) has had profound impact on molecular dynamics simulations and has enabled order-of-magnitude perfor…

physics.flu-dyn2020★ 27 cited

Steady moving contact line of water over a no-slip substrate

Uǧis Lācis, Petter Johansson, Tomas Fullana +4

The movement of the triple contact line plays a crucial role in many applications such as ink-jet printing, liquid coating and drainage (imbibition) in porous media. To design accu…

physics.flu-dyn2019★ 8 cited

Electrowetting diminishes contact line friction in molecular wetting

Petter Johansson, Berk Hess

We use large-scale molecular dynamics to study dynamics at the three-phase contact line in electrowetting of water and electrolytes on no-slip substrates. Under the applied electro…

cond-mat.stat-mech2018★ 34 cited

Riemann metric approach to optimal sampling of multidimensional free-energy landscapes

Viveca Lindahl, Jack Lidmar, Berk Hess

Exploring the free-energy landscape along reaction coordinates or system parameters is central to many studies of high-dimensional model systems in physics, e.g. large molecule…

math.NA2017★ 1 cited

A comparison of the Spectral Ewald and Smooth Particle Mesh Ewald methods in GROMACS

Davood Saffar Shamshirgar, Berk Hess, Anna-Karin Tornberg

The smooth particle mesh Ewald (SPME) method is an FFT based method for the fast evaluation of electrostatic interactions under periodic boundary conditions. A highly optimized imp…

physics.flu-dyn2017★ 64 cited

Molecular Origin of Contact Line Friction in Dynamic Wetting

Petter Johansson, Berk Hess

A hydrophilic liquid, such as water, forms hydrogen bonds with a hydrophilic substrate. The strength and locality of the hydrogen bonding interactions prohibit slip of the liquid o…

cs.CE2015★ 1.2k cited

Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS

Páll Szilárd, Mark James Abraham, Carsten Kutzner +2

GROMACS is a widely used package for biomolecular simulation, and over the last two decades it has evolved from small-scale efficiency to advanced heterogeneous acceleration and mu…

physics.comp-ph2013★ 779 cited

A flexible algorithm for calculating pair interactions on SIMD architectures

Szilárd Páll, Berk Hess

Calculating interactions or correlations between pairs of particles is typically the most time-consuming task in particle simulation or correlation analysis. Straightforward implem…