2 papers
cs.LG2025
A General Algorithm for Detecting Higher-Order Interactions via Random Sequential Additions
Ahmad Shamail, Claire McWhite
Many systems exhibit complex interactions between their components: some features or actions amplify each other's effects, others provide redundant information, and some contribute…
q-bio.QM2025
Automated Protein Motif Localization using Concept Activation Vectors in Protein Language Model Embedding Space
Ahmad Shamail, Claire D. McWhite
We present an automated approach for identifying and annotating motifs and domains in protein sequences, using pretrained Protein Language Models (PLMs) and Concept Activation Vect…