4 papers
Text-guided multi-property molecular optimization with a diffusion language model
Yida Xiong, Kun Li, Jiameng Chen +4
Molecular optimization (MO) is a crucial stage in drug discovery in which task-oriented generated molecules are optimized to meet practical industrial requirements. Existing mainst…
Zero-Shot Learning with Subsequence Reordering Pretraining for Compound-Protein Interaction
Hongzhi Zhang, Zhonglie Liu, Kun Meng +6
Given the vastness of chemical space and the ongoing emergence of previously uncharacterized proteins, zero-shot compound-protein interaction (CPI) prediction better reflects the p…
Knowledge-aware contrastive heterogeneous molecular graph learning
Mukun Chen, Jia Wu, Shirui Pan +4
Molecular representation learning is pivotal in predicting molecular properties and advancing drug design. Traditional methodologies, which predominantly rely on homogeneous graph…
Towards a Better Model with Dual Transformer for Drug Response Prediction
Kun Li, Jia Wu, Bo Du +4
GNN-based methods have achieved excellent results as a mainstream task in drug response prediction tasks in recent years. Traditional GNN methods use only the atoms in a drug molec…