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cond-mat.stat-mech1998
Neutral evolution of model proteins: diffusion in sequence space and overdispersion
Ugo Bastolla, H. Eduardo Roman, Michele Vendruscolo
We simulate the evolution of model protein sequences subject to mutations. A mutation is considered neutral if it conserves 1) the structure of the ground state, 2) its thermodynam…
cond-mat.soft1998
Testing a New Monte Carlo Strategy for Folding Model Proteins
H. Frauenkron, U. Bastolla, E. Gerstner +2
We demonstrate that the recently proposed pruned-enriched Rosenbluth method PERM (P.~Grassberger, Phys.~Rev.~{\bf E 56} (1997) 3682) leads to very efficient algorithms for the fold…