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cond-mat.stat-mech1998
Neutral evolution of model proteins: diffusion in sequence space and overdispersion
Ugo Bastolla, H. Eduardo Roman, Michele Vendruscolo
We simulate the evolution of model protein sequences subject to mutations. A mutation is considered neutral if it conserves 1) the structure of the ground state, 2) its thermodynam…
cond-mat.stat-mech1997
Testing a new Monte Carlo Algorithm for Protein Folding
Ugo Bastolla, Helge Frauenkron, Erwin Gerstner +2
We demonstrate that the recently proposed pruned-enriched Rosenbluth method PERM (P. Grassberger, Phys. Rev. E, in press (1997)) leads to extremely efficient algorithms for the fol…