12 citations · 28 across the 11 of their papers we have counts for
5 papers · 1 filter
Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model
Shiwei Liu, Tian Zhu, Milong Ren +3
Many crucial biological processes rely on networks of protein-protein interactions. Predicting the effect of amino acid mutations on protein-protein binding is vital in protein eng…
Seq-SetNet: Exploring Sequence Sets for Inferring Structures
Fusong Ju, Jianwei Zhu, Guozheng Wei +3
Sequence set is a widely-used type of data source in a large variety of fields. A typical example is protein structure prediction, which takes an multiple sequence alignment (MSA)…
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning
Haicang Zhang, Qi Zhang, Fusong Ju +7
Accurate prediction of inter-residue contacts of a protein is important to calcu- lating its tertiary structure. Analysis of co-evolutionary events among residues has been proved e…
Improving protein threading accuracy via combining local and global potential using TreeCRF model
Haicang Zhang, Mingfu Shao, Chao Wang +3
Protein structure prediction remains to be an open problem in bioinformatics. There are two main categories of methods for protein structure prediction: Free Modeling (FM) and Temp…
Looking for packing units of the protein structure
Wei-Mou Zheng, Hui Zeng, Dong-Bo Bu +3
Lattice-model simulations and experiments of some small proteins suggest that folding is essentially controlled by a few conserved contacts. Residues of these conserved contacts fo…