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cs.LG2024
Computing Gram Matrix for SMILES Strings using RDKFingerprint and Sinkhorn-Knopp Algorithm
Sarwan Ali, Haris Mansoor, Prakash Chourasia +2
In molecular structure data, SMILES (Simplified Molecular Input Line Entry System) strings are used to analyze molecular structure design. Numerical feature representation of SMILE…
cs.LG2023
BioSequence2Vec: Efficient Embedding Generation For Biological Sequences
Sarwan Ali, Usama Sardar, Murray Patterson +1
Representation learning is an important step in the machine learning pipeline. Given the current biological sequencing data volume, learning an explicit representation is prohibiti…