155 citations · 404 across the 20 of their papers we have counts for
Showing 2007 · q-bio.BMShow all
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q-bio.BM2007★ 26 cited
Similarity search for local protein structures at atomic resolution by exploiting a database management system
Akira R. Kinjo, Haruki Nakamura
A method to search for local structural similarities in proteins at atomic resolution is presented. It is demonstrated that a huge amount of structural data can be handled within a…
q-bio.BM2007★ 15 cited
Nature of protein family signatures: Insights from singular value analysis of position-specific scoring matrices
Akira R. Kinjo, Haruki Nakamura
Position-specific scoring matrices (PSSMs) are useful for detecting weak homology in protein sequence analysis, and they are thought to contain some essential signatures of the pro…
q-bio.BM2007★ 7 cited
On the optimal contact potential of proteins
Akira R. Kinjo, Sanzo Miyazawa
We analytically derive the lower bound of the total conformational energy of a protein structure by assuming that the total conformational energy is well approximated by the sum of…