3 papers
physics.optics2025
WaveOrder: A differentiable wave-optical framework for scalable biological microscopy with diverse modalities
Talon Chandler, Ivan E. Ivanov, Gabriel Sturm +23
Correlative computational microscopy can accelerate imaging and modeling of cellular dynamics by relaxing trade-offs inherent to dynamic imaging. Existing computational microscopy…
cs.LG2025
Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop
Elizabeth Fahsbender, Alma Andersson, Jeremy Ash +32
Artificial intelligence holds immense promise for transforming biology, yet a lack of standardized, cross domain, benchmarks undermines our ability to build robust, trustworthy mod…
cs.CV2025
DynaCLR: Contrastive Learning of Cellular Dynamics with Temporal Regularization
Eduardo Hirata-Miyasaki, Soorya Pradeep, Ziwen Liu +10
We report DynaCLR, a self-supervised method for embedding cell and organelle Dynamics via Contrastive Learning of Representations of time-lapse images. DynaCLR integrates single-ce…