5 papers
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
Samir Bhatt, John Sabol, Papri Dey +3
Phylogenetic trees provide a fundamental representation of evolutionary relationships, yet the combinatorial explosion of possible tree topologies renders inference computationally…
phylo2vec: a library for vector-based phylogenetic tree manipulation
Neil Scheidwasser, Ayush Nag, Matthew J Penn +6
Phylogenetics is a fundamental component of evolutionary analysis frameworks in biology and linguistics. Recently, the advent of large-scale genomics and the SARS-CoV-2 pandemic ha…
Dynamic Graph-Based Forecasts of Bookmakers' Odds in Professional Tennis
Matthew J Penn, Jed Michael, Samir Bhatt
Bookmakers' odds consistently provide one of the most accurate methods for predicting the results of professional tennis matches. However, these odds usually only become available…
Phylo2Vec: a vector representation for binary trees
Matthew J Penn, Neil Scheidwasser, Mark P Khurana +3
Binary phylogenetic trees inferred from biological data are central to understanding the shared history among evolutionary units. However, inferring the placement of latent nodes i…
Generalised Bayesian distance-based phylogenetics for the genomics era
Matthew J. Penn, Neil Scheidwasser, Mark P. Khurana +3
As whole genomes become widely available, maximum likelihood and Bayesian phylogenetic methods are demonstrating their limits in meeting the escalating computational demands. Conve…