4 papers
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
Samir Bhatt, John Sabol, Papri Dey +3
Phylogenetic trees provide a fundamental representation of evolutionary relationships, yet the combinatorial explosion of possible tree topologies renders inference computationally…
phylo2vec: a library for vector-based phylogenetic tree manipulation
Neil Scheidwasser, Ayush Nag, Matthew J Penn +6
Phylogenetics is a fundamental component of evolutionary analysis frameworks in biology and linguistics. Recently, the advent of large-scale genomics and the SARS-CoV-2 pandemic ha…
Dynamic Graph-Based Forecasts of Bookmakers' Odds in Professional Tennis
Matthew J Penn, Jed Michael, Samir Bhatt
Bookmakers' odds consistently provide one of the most accurate methods for predicting the results of professional tennis matches. However, these odds usually only become available…
Generalised Bayesian distance-based phylogenetics for the genomics era
Matthew J. Penn, Neil Scheidwasser, Mark P. Khurana +3
As whole genomes become widely available, maximum likelihood and Bayesian phylogenetic methods are demonstrating their limits in meeting the escalating computational demands. Conve…