2 papers
cs.LG2025
Constraint Decoupled Latent Diffusion for Protein Backmapping
Xu Han, Yuancheng Sun, Kai Chen +3
Coarse-grained (CG) molecular dynamics simulations enable efficient exploration of protein conformational ensembles. However, reconstructing atomic details from CG structures (back…
cs.LG2025
EPO: Diverse and Realistic Protein Ensemble Generation via Energy Preference Optimization
Yuancheng Sun, Yuxuan Ren, Zhaoming Chen +3
Accurate exploration of protein conformational ensembles is essential for uncovering function but remains hard because molecular-dynamics (MD) simulations suffer from high computat…