3 papers
cs.AI2026
Beyond Chemical QA: Evaluating LLM's Chemical Reasoning with Modular Chemical Operations
Hao Li, He Cao, Bin Feng +6
While large language models (LLMs) with Chain-of-Thought (CoT) reasoning excel in mathematics and coding, their potential for systematic reasoning in chemistry, a domain demanding…
cs.LG2025
From Static Structures to Ensembles: Studying and Harnessing Protein Structure Tokenization
Zijing Liu, Bin Feng, He Cao +1
Protein structure tokenization converts 3D structures into discrete or vectorized representations, enabling the integration of structural and sequence data. Despite many recent wor…
cs.CL2025
Rethinking Text-based Protein Understanding: Retrieval or LLM?
Juntong Wu, Zijing Liu, He Cao +6
In recent years, protein-text models have gained significant attention for their potential in protein generation and understanding. Current approaches focus on integrating protein-…