40 citations · 51 across the 5 of their papers we have counts for
6 papers
The minimal hitting set generation problem: algorithms and computation
Andrew Gainer-Dewar, Paola Vera-Licona
Finding inclusion-minimal "hitting sets" for a given collection of sets is a fundamental combinatorial problem with applications in domains as diverse as Boolean algebra, computati…
TIGRESS: Trustful Inference of Gene REgulation using Stability Selection
Anne-Claire Haury, Fantine Mordelet, Paola Vera-Licona +1
Inferring the structure of gene regulatory networks (GRN) from gene expression data has many applications, from the elucidation of complex biological processes to the identificatio…
Reverse Engineering of Molecular Networks from a Common Combinatorial Approach
Bhaskar DasGupta, Paola Vera-Licona, Eduardo Sontag
The understanding of molecular cell biology requires insight into the structure and dynamics of networks that are made up of thousands of interacting molecules of DNA, RNA, protein…
Parameter estimation for Boolean models of biological networks
Elena Dimitrova, Luis David Garcia-Puente, Franziska Hinkelmann +5
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, Polynome,…
Inference of ecological interaction networks
Paola Vera-Licona, Reinhard Laubenbacher
The inference of the interactions between organisms in an ecosystem from observational data is an important problem in ecology. This paper presents a mathematical inference method,…
Discretization of Time Series Data
Elena S. Dimitrova, John J. McGee, Reinhard C. Laubenbacher
Data discretization, also known as binning, is a frequently used technique in computer science, statistics, and their applications to biological data analysis. We present a new met…