35 citations · 69 across the 9 of their papers we have counts for
7 papers · 1 filter
Identification of DNA-binding protein target sequences by physical effective energy functions. Free energy analysis of lambda repressor-DNA complexes
E. Moroni, M. Caselle, F. Fogolari
Specific binding of proteins to DNA is one of the most common ways in which gene expression is controlled. Although general rules for the DNA-protein recognition can be derived, th…
K-string tensions at finite temperature and integrable models
Michele Caselle, Pietro Giudice, Ferdinando Gliozzi +2
It has recently been pointed out that simple scaling properties of Polyakov correlation functions of gauge systems in the confining phase suggest that the ratios of k-string tensio…
DrosOCB: a high resolution map of conserved non coding sequences in Drosophila
L. Martignetti, M. Caselle, B. Jacq +1
Comparative genomics methods are widely used to aid the functional annotation of non coding DNA regions. However, aligning non coding sequences requires new algorithms and strategi…
Universal behaviour of interfaces in 2d and dimensional reduction of Nambu-Goto strings
M. Billo, M. Caselle, L. Ferro
We propose a simple effective model for the description of interfaces in 2d statistical models, based on the first-order treatment of an action corresponding to the length of the i…
Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions
Davide Cora, Ferdinando Di Cunto, Michele Caselle +1
3' untranslated regions (3' UTRs) contain binding sites for many regulatory elements, and in particular for microRNAs (miRNAs). The importance of miRNA-mediated post-transcriptiona…
The interface free energy: Comparison of accurate Monte Carlo results for the 3D Ising model with effective interface models
Michele Caselle, Martin Hasenbusch, Marco Panero
We provide accurate Monte Carlo results for the free energy of interfaces with periodic boundary conditions in the 3D Ising model. We study a large range of inverse temperatures, a…