3 papers
cs.LG2026
Multi-scale Graph Autoregressive Modeling: Molecular Property Prediction via Next Token Prediction
Zhuoyang Jiang, Yaosen Min, Peiran Jin +1
We present Connection-Aware Motif Sequencing (CamS), a graph-to-sequence representation that enables decoder-only Transformers to learn molecular graphs via standard next-token pre…
cs.AI2025
Nature Language Model: Deciphering the Language of Nature for Scientific Discovery
Yingce Xia, Peiran Jin, Shufang Xie +43
Foundation models have revolutionized natural language processing and artificial intelligence, significantly enhancing how machines comprehend and generate human languages. Inspire…
q-bio.QM2024
SFM-Protein: Integrative Co-evolutionary Pre-training for Advanced Protein Sequence Representation
Liang He, Peiran Jin, Yaosen Min +7
Proteins, essential to biological systems, perform functions intricately linked to their three-dimensional structures. Understanding the relationship between protein structures and…