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cs.AR2025
CiMBA: Accelerating Genome Sequencing through On-Device Basecalling via Compute-in-Memory
William Andrew Simon, Irem Boybat, Riselda Kodra +8
As genome sequencing is finding utility in a wide variety of domains beyond the confines of traditional medical settings, its computational pipeline faces two significant challenge…
cs.AR2025
pLUTo: Enabling Massively Parallel Computation in DRAM via Lookup Tables
João Dinis Ferreira, Gabriel Falcao, Juan Gómez-Luna +8
Data movement between the main memory and the processor is a key contributor to execution time and energy consumption in memory-intensive applications. This data movement bottlenec…
cs.AR2024
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
Nika Mansouri Ghiasi, Mohammad Sadrosadati, Harun Mustafa +9
Metagenomics has led to significant advances in many fields. Metagenomic analysis commonly involves the key tasks of determining the species present in a sample and their relative…