3 papers
q-bio.GN2026
FASTR: Reimagining FASTQ via Compact Image-inspired Representation
Adrian Tkachenko, Sepehr Salem, Ayotomiwa Ezekiel Adeniyi +7
Motivation: High-throughput sequencing (HTS) enables population-scale genomics but generates massive datasets, creating bottlenecks in storage, transfer, and analysis. FASTQ, the s…
q-bio.GN2026
LCPan: efficient variation graph construction using Locally Consistent Parsing
Akmuhammet Ashyralyyev, Zülal Bingöl, Begüm Filiz Ãz +5
Efficient and consistent string processing is critical in the exponentially growing genomic data era. Locally Consistent Parsing (LCP) addresses this need by partitioning an input…
cs.CR2025
Revisiting Main Memory-Based Covert and Side Channel Attacks in the Context of Processing-in-Memory
F. Nisa Bostanci, Konstantinos Kanellopoulos, Ataberk Olgun +6
We introduce IMPACT, a set of high-throughput main memory-based timing attacks that leverage characteristics of processing-in-memory (PiM) architectures to establish covert and sid…