4 papers
CellStyle: Improved Zero-Shot Cell Segmentation via Style Transfer
Rüveyda Yilmaz, Zhu Chen, Yuli Wu +1
Cell microscopy data are abundant; however, corresponding segmentation annotations remain scarce. Moreover, variations in cell types, imaging devices, and staining techniques intro…
Segment Anything for Cell Tracking
Zhu Chen, Mert Edgü, Er Jin +1
Tracking cells and detecting mitotic events in time-lapse microscopy image sequences is a crucial task in biomedical research. However, it remains highly challenging due to dividin…
Unsupervised Learning for Feature Extraction and Temporal Alignment of 3D+t Point Clouds of Zebrafish Embryos
Zhu Chen, Ina Laube, Johannes Stegmaier
Zebrafish are widely used in biomedical research and developmental stages of their embryos often need to be synchronized for further analysis. We present an unsupervised approach t…
No Free Lunch in Annotation either: An objective evaluation of foundation models for streamlining annotation in animal tracking
Emil Mededovic, Valdy Laurentius, Yuli Wu +5
We analyze the capabilities of foundation models addressing the tedious task of generating annotations for animal tracking. Annotating a large amount of data is vital and can be a…