7 citations · 10 across the 4 of their papers we have counts for
4 papers
Correcting the apparent mutation rate acceleration at shorter time scales under a Jukes-Cantor model
Christopher Tuffley, Timothy White, Michael D. Hendy +1
At macroevolutionary time scales, and for a constant mutation rate, there is an expected linear relationship between time and the number of inferred neutral mutations (the "molecul…
NTRFINDER: A Software Tool to Find Nested Tandem Repeats
A. A. Matroud, M. D. Hendy, C. P. Tuffley
We introduce the software tool NTRFinder to find the complex repetitive structure in DNA we call a nested tandem repeat (NTR). An NTR is a recurrence of two or more distinct tandem…
Maximum Likelihood Jukes-Cantor Triplets: Analytic Solutions
Benny Chor, Michael D. Hendy, Sagi Snir
Complex systems of polynomial equations have to be set up and solved algebraically in order to obtain analytic solutions for maximum likelihood on phylogenetic trees. This has rest…
Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof using Pathsets
Michael D. Hendy, Sagi Snir
In most stochastic models of molecular sequence evolution the probability of each possible pattern of homologous characters at a site is estimated numerically. However in the case…