3 papers
q-bio.MN2026
BioModelsRAG: A Biological Modeling Assistant Using RAG (Retrieval Augmented Generation)
Bhavyahshree Navaneetha Krishnan, Adel Heydarabadipour, Herbert Sauro
The BioModels database is one of the premier databases for computational models in systems biology. The database contains over 1000 curated models and an even larger number of non-…
q-bio.OT2025
From FAIR to CURE: Guidelines for Computational Models of Biological Systems
Herbert M. Sauro, Eran Agmon, Michael L. Blinov +48
Guidelines for managing scientific data have been established under the FAIR principles requiring that data be Findable, Accessible, Interoperable, and Reusable. In many scientific…
q-bio.MN2025
Alias4SBML: A Python Package for Generating Alias Nodes in SBML Models
Adel Heydarabadipour, Herbert M Sauro
Interpreting biological networks becomes challenging when molecular components, such as genes or proteins, participate in numerous interactions, resulting in densely connected regi…